Preclinical DataCite Ontology (PCDO)

Preclinical DataCite Ontology (PCDO)

IRI:
https://w3id.org/preclindo/ontology/pcdo
Version IRI:
https://w3id.org/preclindo/ontology/pcdo/0.1.0
Other visualisations

Classes

Assay c back to ToC or Class ToC

IRI: https://w3id.org/preclindo/ontology/pcdo/Assay

An assay used to generate observations (measurements).

has super-classes
o b i 0000070 c
is in domain of
observes op
is in range of
has assay op
is disjoint with
Subject c

Cohort c back to ToC or Class ToC

IRI: https://w3id.org/preclindo/ontology/pcdo/Cohort

Group of subjects with shared characteristics and treatment.

is in domain of
has subject op
is in range of
applies to cohort op , has cohort op

Dataset c back to ToC or Class ToC

IRI: https://w3id.org/preclindo/ontology/pcdo/Dataset

The DOI-minted dataset deliverable.

has super-classes
dataset c
dataset c
is in domain of
describes study op , has ethics approval op

Ethics Approval c back to ToC or Class ToC

IRI: https://w3id.org/preclindo/ontology/pcdo/EthicsApproval

An institutional ethics approval document or identifier.

has super-classes
i a o 0000311 c
is in range of
has ethics approval op

Intervention c back to ToC or Class ToC

IRI: https://w3id.org/preclindo/ontology/pcdo/Intervention

A planned process such as a drug administration or procedure.

has super-classes
o b i 0000011 c
is in domain of
applies to cohort op , dose value dp , has agent op , has dose unit op , has route op , has schedule op , route label dp , schedule label dp
is disjoint with
Subject c

Observation c back to ToC or Class ToC

IRI: https://w3id.org/preclindo/ontology/pcdo/Observation

A concrete observation linking an assay to a feature of interest and result.

has super-classes
observation c
is disjoint with
Subject c

Outcome Measure c back to ToC or Class ToC

IRI: https://w3id.org/preclindo/ontology/pcdo/OutcomeMeasure

An observable property measured as a study outcome.

has super-classes
observable property c
is in range of
has outcome measure op , observes op

Sample c back to ToC or Class ToC

IRI: https://w3id.org/preclindo/ontology/pcdo/Sample

A specimen derived from a subject.

has super-classes
o b i 0000747 c

Study c back to ToC or Class ToC

IRI: https://w3id.org/preclindo/ontology/pcdo/Study

A preclinical investigation comprising cohorts, interventions, assays, and outcomes.

has super-classes
o b i 0000066 c
is in domain of
has assay op , has cohort op , has outcome measure op , is blinded dp , is randomized dp , sample size dp
is in range of
describes study op

Subject c back to ToC or Class ToC

IRI: https://w3id.org/preclindo/ontology/pcdo/Subject

An experimental animal subject (organism).

has super-classes
o b i 0100026 c
is in domain of
age in days dp , body weight (g) dp , has sex op , has species op , has strain op
is in range of
has subject op
is disjoint with
Assay c , Intervention c , Observation c

Object Properties

applies to cohort op back to ToC or Object Property ToC

IRI: https://w3id.org/preclindo/ontology/pcdo/appliesToCohort

has domain
Intervention c
has range
Cohort c

describes study op back to ToC or Object Property ToC

IRI: https://w3id.org/preclindo/ontology/pcdo/describesStudy

has domain
Dataset c
has range
Study c

has agent op back to ToC or Object Property ToC

IRI: https://w3id.org/preclindo/ontology/pcdo/hasAgent

The active agent, e.g., a CHEBI chemical.

has domain
Intervention c

has assay op back to ToC or Object Property ToC

IRI: https://w3id.org/preclindo/ontology/pcdo/hasAssay

has domain
Study c
has range
Assay c

has cohort op back to ToC or Object Property ToC

IRI: https://w3id.org/preclindo/ontology/pcdo/hasCohort

has domain
Study c
has range
Cohort c

has dose unit op back to ToC or Object Property ToC

IRI: https://w3id.org/preclindo/ontology/pcdo/hasDoseUnit

Link to a QUDT unit IRI (e.g., unit:MilliGM).

has domain
Intervention c

has ethics approval op back to ToC or Object Property ToC

IRI: https://w3id.org/preclindo/ontology/pcdo/hasEthicsApproval

has domain
Dataset c
has range
Ethics Approval c

has outcome measure op back to ToC or Object Property ToC

IRI: https://w3id.org/preclindo/ontology/pcdo/hasOutcomeMeasure

has domain
Study c
has range
Outcome Measure c

has route op back to ToC or Object Property ToC

IRI: https://w3id.org/preclindo/ontology/pcdo/hasRoute

has domain
Intervention c

has schedule op back to ToC or Object Property ToC

IRI: https://w3id.org/preclindo/ontology/pcdo/hasSchedule

has domain
Intervention c

has sex op back to ToC or Object Property ToC

IRI: https://w3id.org/preclindo/ontology/pcdo/hasSex

Link to a PATO sex class (male/female/unknown).

has domain
Subject c

has species op back to ToC or Object Property ToC

IRI: https://w3id.org/preclindo/ontology/pcdo/hasSpecies

Link to an NCBITaxon IRI.

has domain
Subject c

has strain op back to ToC or Object Property ToC

IRI: https://w3id.org/preclindo/ontology/pcdo/hasStrain

has domain
Subject c

has subject op back to ToC or Object Property ToC

IRI: https://w3id.org/preclindo/ontology/pcdo/hasSubject

has domain
Cohort c
has range
Subject c

observes op back to ToC or Object Property ToC

IRI: https://w3id.org/preclindo/ontology/pcdo/observes

has domain
Assay c
has range
Outcome Measure c

Data Properties

age in days dp back to ToC or Data Property ToC

IRI: https://w3id.org/preclindo/ontology/pcdo/ageInDays

has domain
Subject c
has range
integer

body weight (g) dp back to ToC or Data Property ToC

IRI: https://w3id.org/preclindo/ontology/pcdo/bodyWeightGrams

has domain
Subject c
has range
decimal

dose value dp back to ToC or Data Property ToC

IRI: https://w3id.org/preclindo/ontology/pcdo/doseValue

has domain
Intervention c
has range
decimal

is blinded dp back to ToC or Data Property ToC

IRI: https://w3id.org/preclindo/ontology/pcdo/isBlinded

has domain
Study c
has range
boolean

is randomized dp back to ToC or Data Property ToC

IRI: https://w3id.org/preclindo/ontology/pcdo/isRandomized

has domain
Study c
has range
boolean

route label dp back to ToC or Data Property ToC

IRI: https://w3id.org/preclindo/ontology/pcdo/routeLabel

has domain
Intervention c
has range
string

sample size dp back to ToC or Data Property ToC

IRI: https://w3id.org/preclindo/ontology/pcdo/sampleSize

has domain
Study c
has range
integer

schedule label dp back to ToC or Data Property ToC

IRI: https://w3id.org/preclindo/ontology/pcdo/scheduleLabel

has domain
Intervention c
has range
string

Annotation Properties

i a o 0000115 ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000115

Namespace Declarations back to ToC

default namespace
https://w3id.org/preclindo/ontology/pcdo#
dcat
http://www.w3.org/ns/dcat#
obo
http://purl.obolibrary.org/obo/
ontology
https://w3id.org/preclindo/ontology/
owl
http://www.w3.org/2002/07/owl#
pcdo
https://w3id.org/preclindo/ontology/pcdo/
rdf
http://www.w3.org/1999/02/22-rdf-syntax-ns#
rdfs
http://www.w3.org/2000/01/rdf-schema#
schema-org
http://schema.org/
sosa
http://www.w3.org/ns/sosa/
terms
http://purl.org/dc/terms/
xsd
http://www.w3.org/2001/XMLSchema#

This HTML document was obtained by processing the OWL ontology source code through LODE , Live OWL Documentation Environment , developed by Silvio Peroni .