Preclinical DataCite Ontology (PCDO)
Preclinical DataCite Ontology (PCDO)
- IRI:
- https://w3id.org/preclindo/ontology/pcdo
- Version IRI:
- https://w3id.org/preclindo/ontology/pcdo/0.1.0
- Other visualisations
Table of Content
Classes
Cohort c back to ToC or Class ToC
IRI: https://w3id.org/preclindo/ontology/pcdo/Cohort
Group of subjects with shared characteristics and treatment.
- is in domain of
- has subject op
- is in range of
- applies to cohort op , has cohort op
Dataset c back to ToC or Class ToC
IRI: https://w3id.org/preclindo/ontology/pcdo/Dataset
The DOI-minted dataset deliverable.
- has super-classes
- dataset c
- dataset c
- is in domain of
- describes study op , has ethics approval op
Ethics Approval c back to ToC or Class ToC
IRI: https://w3id.org/preclindo/ontology/pcdo/EthicsApproval
An institutional ethics approval document or identifier.
- has super-classes
- i a o 0000311 c
- is in range of
- has ethics approval op
Intervention c back to ToC or Class ToC
IRI: https://w3id.org/preclindo/ontology/pcdo/Intervention
A planned process such as a drug administration or procedure.
- has super-classes
- o b i 0000011 c
- is in domain of
- applies to cohort op , dose value dp , has agent op , has dose unit op , has route op , has schedule op , route label dp , schedule label dp
- is disjoint with
- Subject c
Observation c back to ToC or Class ToC
IRI: https://w3id.org/preclindo/ontology/pcdo/Observation
A concrete observation linking an assay to a feature of interest and result.
- has super-classes
- observation c
- is disjoint with
- Subject c
Outcome Measure c back to ToC or Class ToC
IRI: https://w3id.org/preclindo/ontology/pcdo/OutcomeMeasure
An observable property measured as a study outcome.
- has super-classes
- observable property c
- is in range of
- has outcome measure op , observes op
Sample c back to ToC or Class ToC
IRI: https://w3id.org/preclindo/ontology/pcdo/Sample
A specimen derived from a subject.
- has super-classes
- o b i 0000747 c
Study c back to ToC or Class ToC
IRI: https://w3id.org/preclindo/ontology/pcdo/Study
A preclinical investigation comprising cohorts, interventions, assays, and outcomes.
- has super-classes
- o b i 0000066 c
- is in domain of
- has assay op , has cohort op , has outcome measure op , is blinded dp , is randomized dp , sample size dp
- is in range of
- describes study op
Subject c back to ToC or Class ToC
IRI: https://w3id.org/preclindo/ontology/pcdo/Subject
An experimental animal subject (organism).
- has super-classes
- o b i 0100026 c
- is in domain of
- age in days dp , body weight (g) dp , has sex op , has species op , has strain op
- is in range of
- has subject op
- is disjoint with
- Assay c , Intervention c , Observation c
Object Properties
- applies to cohort
- describes study
- has agent
- has assay
- has cohort
- has dose unit
- has ethics approval
- has outcome measure
- has route
- has schedule
- has sex
- has species
- has strain
- has subject
- observes
applies to cohort op back to ToC or Object Property ToC
IRI: https://w3id.org/preclindo/ontology/pcdo/appliesToCohort
- has domain
- Intervention c
- has range
- Cohort c
describes study op back to ToC or Object Property ToC
IRI: https://w3id.org/preclindo/ontology/pcdo/describesStudy
has agent op back to ToC or Object Property ToC
IRI: https://w3id.org/preclindo/ontology/pcdo/hasAgent
The active agent, e.g., a CHEBI chemical.
- has domain
- Intervention c
has assay op back to ToC or Object Property ToC
IRI: https://w3id.org/preclindo/ontology/pcdo/hasAssay
has cohort op back to ToC or Object Property ToC
IRI: https://w3id.org/preclindo/ontology/pcdo/hasCohort
has dose unit op back to ToC or Object Property ToC
IRI: https://w3id.org/preclindo/ontology/pcdo/hasDoseUnit
Link to a QUDT unit IRI (e.g., unit:MilliGM).
- has domain
- Intervention c
has ethics approval op back to ToC or Object Property ToC
IRI: https://w3id.org/preclindo/ontology/pcdo/hasEthicsApproval
- has domain
- Dataset c
- has range
- Ethics Approval c
has outcome measure op back to ToC or Object Property ToC
IRI: https://w3id.org/preclindo/ontology/pcdo/hasOutcomeMeasure
- has domain
- Study c
- has range
- Outcome Measure c
has route op back to ToC or Object Property ToC
IRI: https://w3id.org/preclindo/ontology/pcdo/hasRoute
- has domain
- Intervention c
has schedule op back to ToC or Object Property ToC
IRI: https://w3id.org/preclindo/ontology/pcdo/hasSchedule
- has domain
- Intervention c
has sex op back to ToC or Object Property ToC
IRI: https://w3id.org/preclindo/ontology/pcdo/hasSex
Link to a PATO sex class (male/female/unknown).
- has domain
- Subject c
has species op back to ToC or Object Property ToC
IRI: https://w3id.org/preclindo/ontology/pcdo/hasSpecies
Link to an NCBITaxon IRI.
- has domain
- Subject c
has strain op back to ToC or Object Property ToC
IRI: https://w3id.org/preclindo/ontology/pcdo/hasStrain
- has domain
- Subject c
has subject op back to ToC or Object Property ToC
IRI: https://w3id.org/preclindo/ontology/pcdo/hasSubject
observes op back to ToC or Object Property ToC
IRI: https://w3id.org/preclindo/ontology/pcdo/observes
- has domain
- Assay c
- has range
- Outcome Measure c
Data Properties
- age in days
- body weight (g)
- dose value
- is blinded
- is randomized
- route label
- sample size
- schedule label
age in days dp back to ToC or Data Property ToC
IRI: https://w3id.org/preclindo/ontology/pcdo/ageInDays
- has domain
- Subject c
- has range
- integer
body weight (g) dp back to ToC or Data Property ToC
IRI: https://w3id.org/preclindo/ontology/pcdo/bodyWeightGrams
- has domain
- Subject c
- has range
- decimal
dose value dp back to ToC or Data Property ToC
IRI: https://w3id.org/preclindo/ontology/pcdo/doseValue
- has domain
- Intervention c
- has range
- decimal
is blinded dp back to ToC or Data Property ToC
IRI: https://w3id.org/preclindo/ontology/pcdo/isBlinded
- has domain
- Study c
- has range
- boolean
is randomized dp back to ToC or Data Property ToC
IRI: https://w3id.org/preclindo/ontology/pcdo/isRandomized
- has domain
- Study c
- has range
- boolean
route label dp back to ToC or Data Property ToC
IRI: https://w3id.org/preclindo/ontology/pcdo/routeLabel
- has domain
- Intervention c
- has range
- string
sample size dp back to ToC or Data Property ToC
IRI: https://w3id.org/preclindo/ontology/pcdo/sampleSize
- has domain
- Study c
- has range
- integer
schedule label dp back to ToC or Data Property ToC
IRI: https://w3id.org/preclindo/ontology/pcdo/scheduleLabel
- has domain
- Intervention c
- has range
- string
Annotation Properties
i a o 0000115 ap back to ToC or Annotation Property ToC
IRI: http://purl.obolibrary.org/obo/IAO_0000115
Namespace Declarations back to ToC
- default namespace
- https://w3id.org/preclindo/ontology/pcdo#
- dcat
- http://www.w3.org/ns/dcat#
- obo
- http://purl.obolibrary.org/obo/
- ontology
- https://w3id.org/preclindo/ontology/
- owl
- http://www.w3.org/2002/07/owl#
- pcdo
- https://w3id.org/preclindo/ontology/pcdo/
- rdf
- http://www.w3.org/1999/02/22-rdf-syntax-ns#
- rdfs
- http://www.w3.org/2000/01/rdf-schema#
- schema-org
- http://schema.org/
- sosa
- http://www.w3.org/ns/sosa/
- terms
- http://purl.org/dc/terms/
- xsd
- http://www.w3.org/2001/XMLSchema#
This HTML document was obtained by processing the OWL ontology source code through LODE , Live OWL Documentation Environment , developed by Silvio Peroni .
An assay used to generate observations (measurements).